Rickettsia gravesii sp. nov.: a novel spotted fever group rickettsia in Western Australian Amblyomma triguttatum triguttatum ticks.
Identifieur interne : 000432 ( Main/Exploration ); précédent : 000431; suivant : 000433Rickettsia gravesii sp. nov.: a novel spotted fever group rickettsia in Western Australian Amblyomma triguttatum triguttatum ticks.
Auteurs : Mohammad Y. Abdad [Australie] ; Rita Abou Abdallah [France] ; Khalid El Karkouri [France] ; Mamadou Beye [France] ; John Stenos [Australie] ; Helen Owen [Australie] ; Nathan Unsworth [Australie] ; Ian Robertson [Australie] ; Stuart D. Blacksell [Royaume-Uni] ; Thi-Tien Nguyen [France] ; Claude Nappez [France] ; Didier Raoult [France] ; Stan Fenwick [Australie] ; Pierre-Edouard Fournier [France]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2017.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Analyse de séquence d'ADN, Animaux, Australie occidentale, Composition en bases nucléiques, Gènes bactériens, Ixodidae (microbiologie), Phylogénie, Rickettsia (), Rickettsia (génétique), Rickettsia (isolement et purification), Rickettsioses, Techniques de typage bactérien.
- MESH :
- génétique : ADN bactérien, ARN ribosomique 16S, Rickettsia.
- isolement et purification : Rickettsia.
- microbiologie : Ixodidae.
- Analyse de séquence d'ADN, Animaux, Australie occidentale, Composition en bases nucléiques, Gènes bactériens, Phylogénie, Rickettsia, Rickettsioses, Techniques de typage bactérien.
English descriptors
- KwdEn :
- Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial (genetics), Genes, Bacterial, Ixodidae (microbiology), Phylogeny, RNA, Ribosomal, 16S (genetics), Rickettsia (classification), Rickettsia (genetics), Rickettsia (isolation & purification), Rickettsia Infections, Sequence Analysis, DNA, Western Australia.
- MESH :
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Rickettsia.
- genetics : Rickettsia.
- isolation & purification : Rickettsia.
- microbiology : Ixodidae.
- Animals, Bacterial Typing Techniques, Base Composition, Genes, Bacterial, Phylogeny, Rickettsia Infections, Sequence Analysis, DNA, Western Australia.
Abstract
A rickettsial organism harboured by Amblyomma triguttatum ticks on Barrow Island, Western Australia, was discovered after reports of possible rickettsiosis among local workers. Subsequent isolation of this rickettsia (strain BWI-1) in cell culture and analysis of its phylogenetic, genotypic and phenotypic relationships with type strains of Rickettsia species with standing in nomenclature suggested that it was sufficiently divergent to warrant its classification as a new species. Multiple gene comparison of strain BWI-1 revealed degrees of sequence similarity with Rickettsia raoultii, its closest relative, of 99.58, 98.89, 97.03, 96.93 and 95.73 % for the 16S rRNA, citrate synthase, ompA, ompB and sca4 genes, respectively. Serotyping in mice also demonstrated that strain BWI-1T was distinct from Rickettsia raoultii. Thus, we propose the naming of a new species, Rickettsia gravesii sp. nov., based on its novel genotypic and phenotypic characteristics. Strain BWI-1T was deposited in the ATCC, CSUR and ARRL collections under reference numbers VR-1664, CSUR R172 and RGBWI-1, respectively.
DOI: 10.1099/ijsem.0.001865
PubMed: 28857025
Affiliations:
- Australie, France, Royaume-Uni
- Angleterre, Oxfordshire, Provence-Alpes-Côte d'Azur
- Marseille, Oxford
- Université d'Aix-Marseille, Université de la Méditerranée
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Le document en format XML
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Abdad</name><affiliation wicri:level="1"><nlm:affiliation>1School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Murdoch 6150, Western Australia, Australia 2Australian Rickettsial Reference Laboratory, Barwon Biomedical Research, Geelong Hospital, Bellerine Street, Geelong 3220, Victoria, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>1School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Murdoch 6150, Western Australia, Australia 2Australian Rickettsial Reference Laboratory, Barwon Biomedical Research, Geelong Hospital, Bellerine Street, Geelong 3220, Victoria</wicri:regionArea><wicri:noRegion>Victoria</wicri:noRegion></affiliation></author><author><name sortKey="Abdallah, Rita Abou" sort="Abdallah, Rita Abou" uniqKey="Abdallah R" first="Rita Abou" last="Abdallah">Rita Abou Abdallah</name><affiliation wicri:level="4"><nlm:affiliation>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05</wicri:regionArea><wicri:noRegion>13385 Marseille cedex 05</wicri:noRegion><orgName type="university">Université d'Aix-Marseille</orgName><placeName><settlement type="city">Marseille</settlement><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author><author><name sortKey="Karkouri, Khalid El" sort="Karkouri, Khalid El" uniqKey="Karkouri K" first="Khalid El" last="Karkouri">Khalid El Karkouri</name><affiliation wicri:level="4"><nlm:affiliation>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05</wicri:regionArea><wicri:noRegion>13385 Marseille cedex 05</wicri:noRegion><orgName type="university">Université d'Aix-Marseille</orgName><placeName><settlement type="city">Marseille</settlement><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author><author><name sortKey="Beye, Mamadou" sort="Beye, Mamadou" uniqKey="Beye M" first="Mamadou" last="Beye">Mamadou Beye</name><affiliation wicri:level="4"><nlm:affiliation>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05</wicri:regionArea><wicri:noRegion>13385 Marseille cedex 05</wicri:noRegion><orgName type="university">Université d'Aix-Marseille</orgName><placeName><settlement type="city">Marseille</settlement><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author><author><name sortKey="Stenos, John" sort="Stenos, John" uniqKey="Stenos J" first="John" last="Stenos">John Stenos</name><affiliation wicri:level="1"><nlm:affiliation>2Australian Rickettsial Reference Laboratory, Barwon Biomedical Research, Geelong Hospital, Bellerine Street, Geelong 3220, Victoria, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>2Australian Rickettsial Reference Laboratory, Barwon Biomedical Research, Geelong Hospital, Bellerine Street, Geelong 3220, Victoria</wicri:regionArea><wicri:noRegion>Victoria</wicri:noRegion></affiliation></author><author><name sortKey="Owen, Helen" sort="Owen, Helen" uniqKey="Owen H" first="Helen" last="Owen">Helen Owen</name><affiliation wicri:level="1"><nlm:affiliation>1School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Murdoch 6150, Western Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>1School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Murdoch 6150, Western Australia</wicri:regionArea><wicri:noRegion>Western Australia</wicri:noRegion></affiliation></author><author><name sortKey="Unsworth, Nathan" sort="Unsworth, Nathan" uniqKey="Unsworth N" first="Nathan" last="Unsworth">Nathan Unsworth</name><affiliation wicri:level="1"><nlm:affiliation>2Australian Rickettsial Reference Laboratory, Barwon Biomedical Research, Geelong Hospital, Bellerine Street, Geelong 3220, Victoria, Australia 4Defense Science and Technology Group, Land Division, 506 Lorimer St. Fishermans Bend, Victoria, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>2Australian Rickettsial Reference Laboratory, Barwon Biomedical Research, Geelong Hospital, Bellerine Street, Geelong 3220, Victoria, Australia 4Defense Science and Technology Group, Land Division, 506 Lorimer St. Fishermans Bend, Victoria</wicri:regionArea><wicri:noRegion>Victoria</wicri:noRegion></affiliation></author><author><name sortKey="Robertson, Ian" sort="Robertson, Ian" uniqKey="Robertson I" first="Ian" last="Robertson">Ian Robertson</name><affiliation wicri:level="1"><nlm:affiliation>1School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Murdoch 6150, Western Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>1School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Murdoch 6150, Western Australia</wicri:regionArea><wicri:noRegion>Western Australia</wicri:noRegion></affiliation></author><author><name sortKey="Blacksell, Stuart D" sort="Blacksell, Stuart D" uniqKey="Blacksell S" first="Stuart D" last="Blacksell">Stuart D. Blacksell</name><affiliation wicri:level="3"><nlm:affiliation>5Mahidol-Oxford Research Unit (MORU), Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand 6Centre for Tropical Medicine and Global Health, Churchill Hospital, University of Oxford, Oxford, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>5Mahidol-Oxford Research Unit (MORU), Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand 6Centre for Tropical Medicine and Global Health, Churchill Hospital, University of Oxford, Oxford</wicri:regionArea><placeName><settlement type="city">Oxford</settlement><region type="country">Angleterre</region><region type="comté" nuts="2">Oxfordshire</region></placeName></affiliation></author><author><name sortKey="Nguyen, Thi Tien" sort="Nguyen, Thi Tien" uniqKey="Nguyen T" first="Thi-Tien" last="Nguyen">Thi-Tien Nguyen</name><affiliation wicri:level="4"><nlm:affiliation>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université d'Aix-Marseille</orgName></affiliation></author><author><name sortKey="Nappez, Claude" sort="Nappez, Claude" uniqKey="Nappez C" first="Claude" last="Nappez">Claude Nappez</name><affiliation wicri:level="4"><nlm:affiliation>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05</wicri:regionArea><wicri:noRegion>13385 Marseille cedex 05</wicri:noRegion><orgName type="university">Université d'Aix-Marseille</orgName><placeName><settlement type="city">Marseille</settlement><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author><author><name sortKey="Raoult, Didier" sort="Raoult, Didier" uniqKey="Raoult D" first="Didier" last="Raoult">Didier Raoult</name><affiliation wicri:level="4"><nlm:affiliation>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05</wicri:regionArea><wicri:noRegion>13385 Marseille cedex 05</wicri:noRegion><orgName type="university">Université d'Aix-Marseille</orgName><placeName><settlement type="city">Marseille</settlement><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author><author><name sortKey="Fenwick, Stan" sort="Fenwick, Stan" uniqKey="Fenwick S" first="Stan" last="Fenwick">Stan Fenwick</name><affiliation wicri:level="1"><nlm:affiliation>1School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Murdoch 6150, Western Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>1School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Murdoch 6150, Western Australia</wicri:regionArea><wicri:noRegion>Western Australia</wicri:noRegion></affiliation></author><author><name sortKey="Fournier, Pierre Edouard" sort="Fournier, Pierre Edouard" uniqKey="Fournier P" first="Pierre-Edouard" last="Fournier">Pierre-Edouard Fournier</name><affiliation wicri:level="4"><nlm:affiliation>7Centre National de Référence des Rickettsia, Coxiella et Bartonella, Faculté de Médecine, Université de la Méditerranée, 27 Boulevard Jean Moulin, 13385 Marseille cedex 05, France 3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>7Centre National de Référence des Rickettsia, Coxiella et Bartonella, Faculté de Médecine, Université de la Méditerranée, 27 Boulevard Jean Moulin, 13385 Marseille cedex 05, France 3URMITE, Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095 IHU - Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13385 Marseille cedex 05</wicri:regionArea><wicri:noRegion>13385 Marseille cedex 05</wicri:noRegion><orgName type="university">Université de la Méditerranée</orgName><placeName><settlement type="city">Marseille</settlement><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="eISSN">1466-5034</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Bacterial Typing Techniques</term><term>Base Composition</term><term>DNA, Bacterial (genetics)</term><term>Genes, Bacterial</term><term>Ixodidae (microbiology)</term><term>Phylogeny</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Rickettsia (classification)</term><term>Rickettsia (genetics)</term><term>Rickettsia (isolation & purification)</term><term>Rickettsia Infections</term><term>Sequence Analysis, DNA</term><term>Western Australia</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Australie occidentale</term><term>Composition en bases nucléiques</term><term>Gènes bactériens</term><term>Ixodidae (microbiologie)</term><term>Phylogénie</term><term>Rickettsia ()</term><term>Rickettsia (génétique)</term><term>Rickettsia (isolement et purification)</term><term>Rickettsioses</term><term>Techniques de typage bactérien</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Rickettsia</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Rickettsia</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ARN ribosomique 16S</term><term>Rickettsia</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Rickettsia</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Rickettsia</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Ixodidae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Ixodidae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Bacterial Typing Techniques</term><term>Base Composition</term><term>Genes, Bacterial</term><term>Phylogeny</term><term>Rickettsia Infections</term><term>Sequence Analysis, DNA</term><term>Western Australia</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Australie occidentale</term><term>Composition en bases nucléiques</term><term>Gènes bactériens</term><term>Phylogénie</term><term>Rickettsia</term><term>Rickettsioses</term><term>Techniques de typage bactérien</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A rickettsial organism harboured by Amblyomma triguttatum ticks on Barrow Island, Western Australia, was discovered after reports of possible rickettsiosis among local workers. Subsequent isolation of this rickettsia (strain BWI-1) in cell culture and analysis of its phylogenetic, genotypic and phenotypic relationships with type strains of Rickettsia species with standing in nomenclature suggested that it was sufficiently divergent to warrant its classification as a new species. Multiple gene comparison of strain BWI-1 revealed degrees of sequence similarity with Rickettsia raoultii, its closest relative, of 99.58, 98.89, 97.03, 96.93 and 95.73 % for the 16S rRNA, citrate synthase, ompA, ompB and sca4 genes, respectively. Serotyping in mice also demonstrated that strain BWI-1T was distinct from Rickettsia raoultii. Thus, we propose the naming of a new species, Rickettsia gravesii sp. nov., based on its novel genotypic and phenotypic characteristics. Strain BWI-1T was deposited in the ATCC, CSUR and ARRL collections under reference numbers VR-1664, CSUR R172 and RGBWI-1, respectively.</div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>Royaume-Uni</li></country><region><li>Angleterre</li><li>Oxfordshire</li><li>Provence-Alpes-Côte d'Azur</li></region><settlement><li>Marseille</li><li>Oxford</li></settlement><orgName><li>Université d'Aix-Marseille</li><li>Université de la Méditerranée</li></orgName></list><tree><country name="Australie"><noRegion><name sortKey="Abdad, Mohammad Y" sort="Abdad, Mohammad Y" uniqKey="Abdad M" first="Mohammad Y" last="Abdad">Mohammad Y. Abdad</name></noRegion><name sortKey="Fenwick, Stan" sort="Fenwick, Stan" uniqKey="Fenwick S" first="Stan" last="Fenwick">Stan Fenwick</name><name sortKey="Owen, Helen" sort="Owen, Helen" uniqKey="Owen H" first="Helen" last="Owen">Helen Owen</name><name sortKey="Robertson, Ian" sort="Robertson, Ian" uniqKey="Robertson I" first="Ian" last="Robertson">Ian Robertson</name><name sortKey="Stenos, John" sort="Stenos, John" uniqKey="Stenos J" first="John" last="Stenos">John Stenos</name><name sortKey="Unsworth, Nathan" sort="Unsworth, Nathan" uniqKey="Unsworth N" first="Nathan" last="Unsworth">Nathan Unsworth</name></country><country name="France"><region name="Provence-Alpes-Côte d'Azur"><name sortKey="Abdallah, Rita Abou" sort="Abdallah, Rita Abou" uniqKey="Abdallah R" first="Rita Abou" last="Abdallah">Rita Abou Abdallah</name></region><name sortKey="Beye, Mamadou" sort="Beye, Mamadou" uniqKey="Beye M" first="Mamadou" last="Beye">Mamadou Beye</name><name sortKey="Fournier, Pierre Edouard" sort="Fournier, Pierre Edouard" uniqKey="Fournier P" first="Pierre-Edouard" last="Fournier">Pierre-Edouard Fournier</name><name sortKey="Karkouri, Khalid El" sort="Karkouri, Khalid El" uniqKey="Karkouri K" first="Khalid El" last="Karkouri">Khalid El Karkouri</name><name sortKey="Nappez, Claude" sort="Nappez, Claude" uniqKey="Nappez C" first="Claude" last="Nappez">Claude Nappez</name><name sortKey="Nguyen, Thi Tien" sort="Nguyen, Thi Tien" uniqKey="Nguyen T" first="Thi-Tien" last="Nguyen">Thi-Tien Nguyen</name><name sortKey="Raoult, Didier" sort="Raoult, Didier" uniqKey="Raoult D" first="Didier" last="Raoult">Didier Raoult</name></country><country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Blacksell, Stuart D" sort="Blacksell, Stuart D" uniqKey="Blacksell S" first="Stuart D" last="Blacksell">Stuart D. 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